All functions

customize_model()

Efficiently edit rows of model code generated from nimble

discretize_classic()

Discretize traps and initial activity centers

get_classic()

Retrieve nimbleCode for spatial capture-recapture models

get_discrete()

Retrieve nimbleCode for discrete spatial capture-recapture models

get_unmarked()

Retrieve nimbleCode for spatial count models

grid_classic()

Define state-space for spatial capture-recapture models

initialize_classic()

Generate starting locations for activity centers

localize_classic()

Prepare classic SCR data components for local modeling approach

mask_polygon()

Create habitat mask matrix or array from polygon

mask_raster()

Create habitat mask matrix or array from raster

nimSummary()

Summarize MCMC chain output from nimble

print_model()

Display row indices for model used in 'nimble'

realized_density()

Generate realized density surface from MCMC output

rescale_classic()

Rescale trap coordinates, grid extent, and starting activity center coordinates

rescale_local()

Rescale trap coordinates, individual-level grid extent, and starting activity center coordinates for local SCR approach

run_classic()

Run spatial capture-recapture models in nimble using parallel processing

run_discrete()

Run discrete spatial capture-recapture models in 'nimble' using parallel processing

sim_classic()

Simulate basic spatial capture-recapture data